@kinemage 1
@caption
(B&T Fig. 1.2, 1.5, 1.6, 1.8)
Polypeptide fragment with rotatable Phi, Psi, and Chi angles.  Main chain is white, Calpha-Cbeta bonds are seagreen, the Phe side chain is cyan, and H atoms are brown.  N and O atoms are marked in blue and red.  Angles can be rotated using the sliders in the righthand panel.
@zoom 1.00
@zslab 220
@ztran 0
@center 27.732 14.188 2.696
@matrix
-0.531301 -0.647320 -0.546530 -0.363856 0.756940 -0.542817 0.765067 -0.089540 -0.637697
@2viewid {down cb-ca}
@2zoom 1.00
@2zslab 200
@2center 27.732 14.188 2.696
@2matrix
-0.912591 -0.121955 -0.390261 -0.226881 0.945094 0.235203 0.340151 0.303190 -0.890155
@3viewid {for spheres}
@3zoom 0.51
@3zslab 220
@3ztran 0
@3center 27.732 14.188 2.696
@3matrix
-0.326706 -0.681913 -0.654413 -0.196149 0.726254 -0.658848 0.924548 -0.086886 -0.371031
@master {H}
@master {side chain}
@master {atom labels}
@master {angle label}
@master {spheres}
@group {to n-2} dominant
@subgroup {mainchain}
@dotlist {PHI} color= yellowtint off 1bondrot -144.0 
{ca phe 45}27.732 14.188 2.696
{n phe 45}28.153 12.815 2.580
@balllist {mc O} color= red radius= 0.140
{o asn 43}29.509 8.713 0.383
@balllist {mc N} color= blue radius= 0.155
{n asn 44}30.046 10.861 0.676
@vectorlist {mc} color= yellowtint
{ca asn 43}P 30.606 9.993 -1.413
{c asn 43}29.969 9.793 -0.018
{o asn 43}29.509 8.713 0.383
{c asn 43}P 29.969 9.793 -0.018
{n asn 44}30.046 10.861 0.676
@subgroup {spheres} master= {spheres} off
@spherelist {mc O} color= red radius= 1.400
{o asn 43}29.509 8.713 0.383
@spherelist {mc N} color= blue radius= 1.550
{n asn 44}30.046 10.861 0.676
@spherelist {mc CA} color= sea radius= 1.750
{ca asn 43}30.606 9.993 -1.413
@spherelist {mc CO} color= sea radius= 1.650
{c asn 43}29.969 9.793 -0.018
@group {Ala  n-1} dominant
@subgroup {mainchain}
@balllist {mc N} color= blue radius= 0.155
{n ala 44}30.046 10.861 0.676
{n phe 45}28.153 12.815 2.580
@balllist {mc O} color= red radius= 0.140
{o ala 44}30.342 13.278 2.230
@vectorlist {mc} color= yellowtint
{n ala 44}P 30.046 10.861 0.676
{ca ala 44}29.640 11.000 2.115
{c ala 44}29.416 12.491 2.307
{o ala 44}30.342 13.278 2.230
{c ala 44}P 29.416 12.491 2.307
{n phe 45}28.153 12.815 2.580
@labellist {atom labels} color= yellowtint master= {atom labels} off
{ O n-1}30.456 13.384 2.305
@subgroup {H} master= {H}
@vectorlist {H} color= brown
{n ala 44}P 30.046 10.861 0.676
{d ala 44}30.463 11.746 0.471
{ca ala 44}P 29.640 11.000 2.115
{ha ala 44}28.805 10.404 2.232
@spherelist {mc H} color= gray master= {spheres} off radius= 1.000
{d ala 44}30.463 11.746 0.471
@spherelist {mc Ha} color= gray master= {spheres} off radius= 1.170
{ha ala 44}28.805 10.404 2.232
@subgroup {sc} master= {side chain}
@vectorlist {ca-cb} color= sea
{ca ala 44}P 29.640 11.000 2.115
{cb ala 44}30.713 10.365 2.984
@subgroup {sc H} master= {H} master= {side chain}
@vectorlist {sc H} color= brown
{cb ala 44}P 30.713 10.365 2.984
{hb1 ala 44}31.586 10.827 2.831
{cb ala 44}P 30.713 10.365 2.984
{hb2 ala 44}30.805 9.397 2.749
{cb ala 44}P 30.713 10.365 2.984
{hb3 ala 44}30.458 10.449 3.947
@spherelist {Hb} color= gray master= {spheres} off radius= 1.170
{hb1 ala 44}31.586 10.827 2.831
{hb2 ala 44}30.805 9.397 2.749
{hb3 ala 44}30.458 10.449 3.947
@subgroup {spheres} master= {spheres} off
@spherelist {mc N} color= blue radius= 1.550
{n ala 44}30.046 10.861 0.676
{n phe 45}28.153 12.815 2.580
@spherelist {mc CA} color= sea radius= 1.750
{ca ala 44}29.640 11.000 2.115
@spherelist {mc CO} color= sea radius= 1.650
{c ala 44}29.416 12.491 2.307
@spherelist {mc O} color= red radius= 1.400
{o ala 44}30.342 13.278 2.230
@spherelist {CB} color= sea master= {side chain} radius= 1.750
{cb ala 44}30.713 10.365 2.984
@group {Phe  n} dominant
@subgroup {mainchain}
@balllist {mc N} color= blue radius= 0.155
{n phe 45} <ball before h>28.153 12.815 2.580
@vectorlist {mc n-H} color= brown master= {H}
{n phe 45}P 28.153 12.815 2.580
{h phe 45}27.393 12.141 2.579
@labellist {mc H} color= yellowtint master= {atom labels} off
{ H}27.393 12.141 2.579
@spherelist {mc H} color= gray master= {H} master= {spheres} off radius= 1.000
{h phe 45}27.393 12.141 2.579
@subgroup {dummy end PHI}
@dotlist {PHIend} color= white off nobutton 0bondrot 0.0
{ca phe 45}27.732 14.188 2.696
{n phe 45}28.153 12.815 2.580
@subgroup {mainchain}
@balllist {mc N} color= blue radius= 0.155
{n phe 45}28.153 12.815 2.580
@balllist {mc N} color= green radius= 0.175
{ca phe 45}27.732 14.188 2.696
@vectorlist {mc} color= yellowtint
{n phe 45}P 28.153 12.815 2.580
{ca phe 45}27.732 14.188 2.696
{c phe 45}26.649 14.315 3.805
@labellist {atom labels} color= yellowtint master= {atom labels} off
{ N} <n phe 45>28.253 12.915 2.680
{ Ca} <ca phe 45>27.832 14.288 2.796
{ C} <c phe 45>26.749 14.415 3.905
@labellist {angle labels} color= pinktint master= {angle label}
{   PHI}27.943 13.501 2.638
{   PSI}27.330 14.240 3.110
@labellist {atom labels} color= yellowtint master= {atom labels} off
{ Ha}28.527 14.889 2.741
@subgroup {mc H} master= {H}
@vectorlist {mc n-H} color= brown
{ca phe 45}P 27.732 14.188 2.696
{ha phe 45}28.527 14.889 2.741
@spherelist {mc HA} color= gray master= {spheres} off radius= 1.170
{ha phe 45}28.527 14.889 2.741
@subgroup {ca-cb} master= {side chain}
@labellist {atom labels} color= yellowtint master= {atom labels} off
{ Cb}27.054 14.595 1.345
@vectorlist {CHI1 ca-cb} color= sea 2bondrot -69.0 
{ca phe 45}P 27.732 14.188 2.696
{cb phe 45}27.054 14.595 1.345
@labellist {angle labels} color= cyan master= {angle label}
{  Chi 1}27.393 14.392 2.021
@subgroup {sc H} master= {H} master= {side chain}
@vectorlist {sc H} color= brown
{cb phe 45}P 27.054 14.595 1.345
{1hb phe 45}26.492 13.665 1.226
{cb phe 45}P 27.054 14.595 1.345
{2hb phe 45}26.348 15.392 1.481
@spherelist {sc H} color= gray master= {spheres} off radius= 1.170
{1hb phe 45}26.492 13.665 1.226
{2hb phe 45}26.348 15.392 1.481
@subgroup {CHI2} master= {side chain}
@labellist {angle labels} color= cyan master= {angle label}
{ Chi 2}27.514 14.645 0.763
@vectorlist {CHI2 cb-cg} color= cyan 3bondrot 91.0 
{cb phe 45}P 27.054 14.595 1.345
{cg phe 45}27.975 14.695 0.181
@vectorlist {sc} color= cyan
{cg phe 45}P 27.975 14.695 0.181
{cd1 phe 45}28.219 13.614 -0.648
{cg phe 45}P 27.975 14.695 0.181
{cd2 phe 45}28.650 15.891 0.032
{cd1 phe 45}P 28.219 13.614 -0.648
{ce1 phe 45}29.102 13.713 -1.710
{cd2 phe 45}P 28.650 15.891 0.032
{ce2 phe 45}29.563 16.015 -1.036
{ce1 phe 45}P 29.102 13.713 -1.710
{cz phe 45}29.757 14.910 -1.867
{ce2 phe 45}P 29.563 16.015 -1.036
{cz phe 45}29.757 14.910 -1.867
@subgroup {sc H} master= {H} master= {side chain}
@vectorlist {sc H} color= brown
{cd1 phe 45}P 28.219 13.614 -0.648
{hd1 phe 45}27.722 12.729 -0.457
{cd2 phe 45}P 28.650 15.891 0.032
{hd2 phe 45}28.436 16.737 0.652
{ce1 phe 45}P 29.102 13.713 -1.710
{he1 phe 45}29.314 12.919 -2.362
{ce2 phe 45}P 29.563 16.015 -1.036
{he2 phe 45}30.022 16.897 -1.249
{cz phe 45}P 29.757 14.910 -1.867
{hz phe 45}30.422 14.994 -2.698
@spherelist {sc H} color= gray master= {spheres} off radius= 1.170
{hd1 phe 45}27.722 12.729 -0.457
{hd2 phe 45}28.436 16.737 0.652
{he1 phe 45}29.314 12.919 -2.362
{he2 phe 45}30.022 16.897 -1.249
{hz phe 45}30.422 14.994 -2.698
@subgroup {spheres} master= {side chain}
@spherelist {sc C} color= sea master= {spheres} off radius= 1.750
{cb phe 45}27.054 14.595 1.345
{cg phe 45}27.975 14.695 0.181
{cd1 phe 45}28.219 13.614 -0.648
{cd2 phe 45}28.650 15.891 0.032
{ce1 phe 45}29.102 13.713 -1.710
{ce2 phe 45}29.563 16.015 -1.036
{cz phe 45}29.757 14.910 -1.867
@dotlist {CHI2 end} color= cyan off nobutton 0bondrot 0.0
{cb phe 45}27.054 14.595 1.345
{cg phe 45}27.916 14.462 0.140
@subgroup {spheres} master= {spheres} off
@spherelist {mc N} color= blue radius= 1.550
{n phe 45}28.153 12.815 2.580
@spherelist {mc CA} color= sea radius= 1.750
{ca phe 45}27.732 14.188 2.696
@subgroup {mainchain}
@vectorlist {PSI ca-c} color= yellowtint 4bondrot 153.0 
{ca phe 45}P 27.732 14.188 2.696
{c phe 45}26.649 14.315 3.805
@labellist {atom labels} color= yellowtint master= {atom labels} off
{ O}25.953 13.520 4.118
@balllist {mc O} color= red radius= 0.140
{o phe 45}25.853 13.421 4.017
@balllist {mc N} color= blue radius= 0.155
{n ala 46}26.658 15.521 4.330
@vectorlist {mc} color= yellowtint
{c phe 45}P 26.649 14.315 3.805
{o phe 45}25.853 13.421 4.017
{c phe 45}P 26.649 14.315 3.805
{n ala 46}26.658 15.521 4.330
@spherelist {mc O} color= red master= {spheres} off radius= 1.400
{o phe 45}25.853 13.421 4.017
@spherelist {mc C} color= sea master= {spheres} off radius= 1.650
{c phe 45}26.649 14.315 3.805
@group {Ala  n+1} dominant
@subgroup {mainchain}
@balllist {mc N} color= blue radius= 0.155
{n ala 46}26.658 15.521 4.330
{n ser 47}24.346 16.743 3.630
@balllist {mc O} color= red radius= 0.140
{o ala 46}23.392 16.231 5.655
@vectorlist {mc} color= yellowtint
{n ala 46}P 26.658 15.521 4.330
{ca ala 46}25.675 15.808 5.404
{c ala 46}24.367 16.296 4.882
{o ala 46}23.392 16.231 5.655
{c ala 46}P 24.367 16.296 4.882
{n ser 47}24.346 16.743 3.630
@labellist {angle labels} color= pinktint master= {angle label}
{   Omega}26.652 14.769 4.002
@vectorlist {H} color= brown master= {H}
{n ala 46}P 26.658 15.521 4.330
{d ala 46}27.351 16.217 4.054
{ca ala 46}P 25.675 15.808 5.404
{ha ala 46}25.459 14.848 5.823
@labellist {atom labels} color= yellowtint master= {atom labels} off
{ H n+1}27.351 16.217 4.054
@subgroup {mc H} master= {H}
@spherelist {mc H} color= gray master= {spheres} off radius= 1.000
{d ala 46}27.351 16.217 4.054
@spherelist {mc H} color= gray master= {spheres} off radius= 1.170
{ha ala 46}25.459 14.848 5.823
@subgroup {sidechain} master= {side chain}
@vectorlist {ca-cb} color= sea
{ca ala 46}P 25.675 15.808 5.404
{cb ala 46}26.196 16.712 6.521
@vectorlist {H} color= brown master= {H}
{cb ala 46}P 26.196 16.712 6.521
{hb1 ala 46}26.470 17.594 6.138
{cb ala 46}P 26.196 16.712 6.521
{hb2 ala 46}26.985 16.282 6.959
{cb ala 46}P 26.196 16.712 6.521
{hb3 ala 46}25.476 16.855 7.200
@spherelist {sc H} color= gray master= {spheres} master= {H} off radius= 1.170
{hb1 ala 46}26.470 17.594 6.138
{hb2 ala 46}26.985 16.282 6.959
{hb3 ala 46}25.476 16.855 7.200
@subgroup {spheres} master= {spheres} off
@spherelist {mc N} color= blue radius= 1.550
{n ala 46}26.658 15.521 4.330
{n ser 47}24.346 16.743 3.630
@spherelist {mc O} color= red radius= 1.400
{o ala 46}23.392 16.231 5.655
@spherelist {mc CA} color= sea radius= 1.750
{ca ala 46}25.675 15.808 5.404
@spherelist {mc CO} color= sea radius= 1.650
{c ala 46}24.367 16.296 4.882
@spherelist {CB} color= sea master= {side chain} radius= 1.750
{cb ala 46}26.196 16.712 6.521
@group {to n+2} dominant
@subgroup {mainchain}
@balllist {mc N} color= blue radius= 0.155
{n ser 47}24.346 16.743 3.630
@vectorlist {mc} color= yellowtint
{n ser 47}P 24.346 16.743 3.630
{ca ser 47}23.079 17.207 3.070
@subgroup {mc H} master= {H}
@vectorlist {mc H} color= brown
{n ser 47}P 24.346 16.743 3.630
{d ser 47}25.189 16.759 3.061
@spherelist {mc H} color= gray master= {spheres} off radius= 1.000
{d ser 47}25.189 16.759 3.061
@subgroup {spheres} master= {spheres} off
@spherelist {mc N} color= blue radius= 1.550
{n ser 47}24.346 16.743 3.630
@spherelist {mc CA} color= sea radius= 1.750
{ca ser 47}23.079 17.207 3.070